There is a chance the intake was machined too far and the shoe sits too shallow, or maybe the shoe is just shallow and needs to be shimmed down..Thats the beauty of having an intake machined for a shoe, its fully adjustable.I reccomend getting the intake set as good as you can and build a shoe that works well for that particular set up.Id also reccomend a 2 degree backcut on that CP. A good starting point is to set the deepest part of the backcut shoe even with the keel, the deepest part of a backcut is where the shoe meets the rideplate. If its a flat or tapered shoe start out with the biting edge even or just ABOVE the keel line. From what I have seen, the CP doesnt like a ton of biting edge unlike other boats.
Post some pics with a straight edge/shoe relationship if you need more help.
Good luck.